Basic Information
Locus ID:
GOSA_00023926
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig772 | 9912 | 14048 | - | GOSA_00023926 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 64,989.16 Da | 45.05 | 94.13 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 78 | 124 | 1.3E-22 | IPR041101 |
| Pfam | PF18511 | F-box | 19 | 58 | 3.2E-19 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 82 | 548 | 1.83E-30 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 18 | 52 | 2.62E-5 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 16 | 57 | 2.7E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 58 | 583 | 7.2E-168 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 383 | 407 | 44.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 325 | 348 | 400.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 116 | 140 | 370.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 492 | 516 | 12.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 443 | 466 | 32.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 141 | 166 | 79.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_010686279.1 | protein TRANSPORT INHIBITOR RESPONSE 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QY36 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_133610 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology