Basic Information
Locus ID:
GOSA_00023828
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig459 | 586240 | 587577 | + | GOSA_00023828 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 49,562.39 Da | 47.60 | 104.22 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 31 | 73 | 4.20358E-26 | - |
| Pfam | PF04564 | U-box domain | 27 | 98 | 5.7E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 27 | 103 | 7.07E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 146 | 422 | 1.51E-12 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 115 | 426 | 3.4E-12 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 7 | 104 | 4.0E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 30 | 93 | 8.3E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 26 | 100 | 38.073658 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66160.1 | CYS, MET, PRO, and GLY protein 1. | 0 |
| RefSeq | XP_010665787.2 | U-box domain-containing protein 20 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9C8D1 | U-box domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=PUB20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8B9C2 | RING-type E3 ubiquitin transferase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_8g201840 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology