HalophFGD

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Basic Information
Locus ID: GOSA_00023619
Species & Taxonomic ID: Suaeda aralocaspica & 224144
Genome Assembly: GCA_016808085.1
Description: Protein FAR1-RELATED SEQUENCE 5-like
Maps and Mapping Data
Chromosome Start End Strand ID
Contig1453 144790 150623 + GOSA_00023619
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.20 75,873.75 Da 36.97 75.04 -0.58
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF03101 FAR1 DNA-binding domain 54 143 9.3E-18 IPR004330
ProSiteProfiles PS50966 Zinc finger SWIM-type profile. 435 471 9.26018 IPR007527
MobiDBLite mobidb-lite consensus disorder prediction 569 623 - -
Gene Ontology
Molecular Function:
GO:0008270 (zinc ion binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_048498353.1 protein FAR1-RELATED SEQUENCE 5-like [Beta vulgaris subsp. vulgaris] 0
TrEMBL A0A7N0RBL2 Protein FAR1-RELATED SEQUENCE OS=Kalanchoe fedtschenkoi OX=63787 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Amaranthaceae Suaeda aralocaspica 4 GOSA_00014604, GOSA_00014605, GOSA_00014807, GOSA_00023619
Amaranthaceae Suaeda glauca 69 Sgl00340, Sgl00670, Sgl00740, Sgl00768, Sgl02587, Sgl03588 ...
Sgl04848, Sgl05396, Sgl05687, Sgl05773, Sgl06654, Sgl07743, Sgl08711, Sgl08712, Sgl09291, Sgl09891, Sgl10123, Sgl11267, Sgl12085, Sgl12211, Sgl12282, Sgl13848, Sgl13857, Sgl15315, Sgl15331, Sgl16659, Sgl17379, Sgl17449, Sgl17512, Sgl19021, Sgl20279, Sgl21137, Sgl24726, Sgl25611, Sgl26501, Sgl30781, Sgl32060, Sgl32061, Sgl34323, Sgl34325, Sgl34387, Sgl36019, Sgl37352, Sgl39724, Sgl39726, Sgl43147, Sgl43248, Sgl44007, Sgl46477, Sgl47605, Sgl48076, Sgl48776, Sgl50199, Sgl51202, Sgl55534, Sgl64142, Sgl68597, Sgl70548, Sgl73296, Sgl76815, Sgl78827, Sgl78928, Sgl79630, Sgl79779, Sgl79784, Sgl81389, Sgl82092, Sgl82226, Sgl82229
Plumbaginaceae Limonium bicolor 3 Lb0G37147, Lb3G20849, Lb6G29885
Tamaricaceae Reaumuria soongarica 2 MSTRG.16888_chr09_+, STRG.24247_chr10_+
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.