Basic Information
Locus ID:
GOSA_00023378
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig473 | 50094 | 53127 | + | GOSA_00023378 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 39,639.65 Da | 33.23 | 81.37 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 60 | 354 | 2.59196E-51 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 59 | 94 | 8.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 274 | 311 | 0.039 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 316 | 353 | 1.7E-7 | IPR001680 |
| Pfam | PF08662 | Eukaryotic translation initiation factor eIF2A | 102 | 189 | 6.4E-6 | IPR013979 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 53 | 353 | 4.58E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 54 | 354 | 9.2E-66 | IPR015943 |
| SMART | SM00320 | WD40_4 | 100 | 139 | 2.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 185 | 225 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 142 | 183 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 227 | 265 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 55 | 94 | 6.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 314 | 354 | 3.3E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 269 | 311 | 1.2 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 62 | 103 | 12.145943 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 107 | 148 | 14.384962 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 107 | 143 | 11.075592 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 62 | 95 | 9.99469 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 321 | 358 | 15.287253 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 321 | 358 | 13.922852 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021847893.1 | WD repeat-containing protein 26 [Spinacia oleracea] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R6N3 | WD repeat-containing protein 26-like OS=Spinacia oleracea OX=3562 GN=SOVF_100250 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology