Basic Information
Locus ID:
GOSA_00023222
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig568 | 606530 | 614348 | - | GOSA_00023222 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 139,055.41 Da | 52.65 | 82.39 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 1113 | 1155 | 1.66165E-19 | - |
| CDD | cd12108 | Hr-like | 601 | 747 | 1.03628E-19 | - |
| CDD | cd12108 | Hr-like | 36 | 161 | 4.61122E-21 | - |
| Pfam | PF05495 | CHY zinc finger | 982 | 1058 | 9.0E-16 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 1111 | 1154 | 1.0E-7 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 601 | 748 | 2.9E-6 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1160 | 1217 | 7.1E-21 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 32 | 163 | 3.7E-8 | IPR012312 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1103 | 1159 | 1.94E-8 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1049 | 1106 | 2.35E-17 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1106 | 1157 | 3.2E-10 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 32 | 180 | 8.5E-22 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1184 | 1219 | 1.9E-15 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 591 | 798 | 1.6E-19 | - |
| SMART | SM00184 | ring_2 | 1113 | 1154 | 4.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1113 | 1155 | 11.559839 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1048 | 1112 | 28.411404 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 975 | 1045 | 23.162699 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18910.1 | zinc ion binding;zinc ion binding. | 0 |
| RefSeq | XP_021733753.1 | zinc finger protein BRUTUS-like At1g18910 isoform X1 [Chenopodium quinoa] | 0 |
| F4IDY5 | Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1g18910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RX52 | Zinc finger protein BRUTUS-like At1g18910 OS=Spinacia oleracea OX=3562 GN=SOVF_024830 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology