Basic Information
Locus ID:
GOSA_00023189
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig294 | 920775 | 925851 | + | GOSA_00023189 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 69,179.33 Da | 47.37 | 101.27 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 409 | 443 | 1.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 362 | 397 | 6.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 447 | 485 | 5.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 357 | 611 | 1.21E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 355 | 613 | 5.0E-57 | IPR015943 |
| SMART | SM00320 | WD40_4 | 113 | 152 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 359 | 398 | 1.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 571 | 613 | 310.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 529 | 567 | 30.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 446 | 485 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 404 | 443 | 1.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 487 | 527 | 120.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 411 | 448 | 10.917412 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 411 | 452 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 161 | 193 | 7.829064 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 194 | 251 | 8.872572 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 366 | 399 | 10.100143 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 366 | 399 | 12.112524 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 385 | 399 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 472 | 486 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021843614.1 | WD repeat-containing protein 26-like [Spinacia oleracea] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R545 | WD repeat-containing protein 26 OS=Spinacia oleracea OX=3562 GN=SOVF_111900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology