Basic Information
Locus ID:
GOSA_00023186
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig294 | 889197 | 899698 | - | GOSA_00023186 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.51 | 77,132.19 Da | 49.17 | 97.63 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 455 | 493 | 5.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 417 | 451 | 1.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 581 | 620 | 0.033 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 625 | 663 | 1.9E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 43 | 663 | 9.68E-60 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 29 | 196 | 4.35E-5 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 628 | 680 | 9.8E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 373 | 627 | 1.5E-48 | IPR015943 |
| SMART | SM00320 | WD40_4 | 412 | 451 | 1.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 624 | 664 | 8.5E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 537 | 575 | 30.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 495 | 535 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 155 | 194 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 45 | 84 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 454 | 493 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 579 | 621 | 0.69 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 203 | 235 | 7.829064 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 419 | 460 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 236 | 293 | 8.872572 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 631 | 673 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 631 | 666 | 11.233774 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 419 | 456 | 10.917412 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 480 | 494 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_010680145.1 | WD repeat-containing protein 26 homolog [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KWW7 | WD repeat-containing protein 26 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology