Basic Information
Locus ID:
GOSA_00022776
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig439 | 267361 | 270070 | + | GOSA_00022776 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 44,998.45 Da | 37.06 | 110.02 | 0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00083 | Sugar (and other) transporter | 1 | 386 | 8.6E-33 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 3 | 387 | 1.28E-50 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 1 | 389 | 4.8E-70 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 1 | 382 | 27.413637 | IPR020846 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 407 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_010675318.1 | organic cation/carnitine transporter 7 [Beta vulgaris subsp. vulgaris] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RYM9 | MFS domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_014400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology