Basic Information
Locus ID:
GOSA_00022721
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig163 | 531875 | 541765 | + | GOSA_00022721 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.00 | 81,202.73 Da | 51.13 | 84.64 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 214 | 360 | 1.00444E-58 | - |
| CDD | cd17920 | DEXHc_RecQ | 59 | 213 | 9.25826E-59 | - |
| Pfam | PF16124 | RecQ zinc-binding | 364 | 435 | 8.4E-12 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 247 | 349 | 2.1E-12 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 76 | 207 | 3.86E-15 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 212 | 452 | 5.33E-41 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 214 | 453 | 3.5E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 73 | 213 | 2.0E-48 | IPR027417 |
| SMART | SM00490 | helicmild6 | 257 | 351 | 5.7E-14 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 56 | 440 | 2.4E-105 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 77 | 206 | 14.105476 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 233 | 391 | 14.109035 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 699 | 726 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 700 | 714 | - | - |
| Coils | Coil | Coil | 558 | 578 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_021858815.1 | ATP-dependent DNA helicase Q-like 3 isoform X1 [Spinacia oleracea] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M8N9 | ATP-dependent DNA helicase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology