Basic Information
Locus ID:
GOSA_00022700
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig163 | 233210 | 245959 | + | GOSA_00022700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 41,551.09 Da | 40.82 | 69.61 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 34 | 104 | 3.05075E-35 | - |
| CDD | cd12619 | RRM2_PUB1 | 118 | 192 | 1.04269E-52 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 119 | 189 | 7.4E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 34 | 100 | 3.4E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 256 | 298 | 7.5E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 32 | 196 | 5.3E-45 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 228 | 309 | 5.29E-15 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 18 | 109 | 5.6E-19 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 215 | 309 | 5.3E-15 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 110 | 210 | 1.7E-28 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 118 | 191 | 0.0066 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 33 | 102 | 1.0E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 118 | 191 | 6.0E-25 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 239 | 301 | 1.5E-5 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 117 | 195 | 17.949841 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 242 | 305 | 10.581908 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 32 | 106 | 15.169811 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 235 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_021756703.1 | oligouridylate-binding protein 1-like [Chenopodium quinoa] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QES4 | Oligouridylate-binding protein 1-like OS=Spinacia oleracea OX=3562 GN=SOVF_192880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology