Basic Information
Locus ID:
GOSA_00022485
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Chromatin structure-remodeling complex subunit RSC1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig109 | 951800 | 958073 | + | GOSA_00022485 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 32,368.58 Da | 41.29 | 72.69 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04714 | BAH_BAHCC1 | 23 | 157 | 9.21149E-54 | - |
| Pfam | PF01426 | BAH domain | 24 | 136 | 3.8E-22 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 141 | 189 | 8.0E-10 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 131 | 193 | 2.02E-18 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 136 | 202 | 3.3E-19 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 6 | 135 | 6.1E-30 | IPR043151 |
| SMART | SM00249 | PHD_3 | 141 | 188 | 6.5E-8 | IPR001965 |
| SMART | SM00439 | BAH_4 | 21 | 137 | 1.2E-41 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 139 | 190 | 9.134 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 137 | 23.567734 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 142 | 187 | - | IPR019786 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_010690826.1 | chromatin remodeling protein EBS isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LPA1 | Chromatin remodeling protein SHL-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology