Basic Information
Locus ID:
GOSA_00022356
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig205 | 685462 | 708392 | + | GOSA_00022356 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 116,525.36 Da | 46.86 | 76.13 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 265 | 653 | 1.62065E-129 | - |
| Pfam | PF01753 | MYND finger | 78 | 115 | 4.2E-10 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 262 | 653 | 9.3E-42 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 461 | 655 | 2.75E-59 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 74 | 120 | 2.44E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 262 | 442 | 1.08E-37 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 447 | 665 | 3.3E-64 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 261 | 446 | 2.1E-40 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 65 | 120 | 5.7E-13 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 256 | 656 | 43.321983 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 78 | 115 | 12.190331 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 78 | 115 | - | IPR002893 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_021864530.1 | ubiquitin carboxyl-terminal hydrolase 18-like [Spinacia oleracea] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9R6D3 | Ubiquitin carboxyl-terminal hydrolase 18-like OS=Spinacia oleracea OX=3562 GN=SOVF_107080 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology