Basic Information
Locus ID:
GOSA_00022255
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig45 | 279924 | 289120 | - | GOSA_00022255 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 49,818.96 Da | 37.81 | 96.26 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 340 | 2.75E-20 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 72 | 378 | 4.6E-12 | IPR015943 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G30510.1 | homolog of yeast autophagy 18 (ATG18) B. | 0 |
| RefSeq | XP_021756835.1 | autophagy-related protein 18b-like isoform X1 [Chenopodium quinoa] | 0 |
| Q8H1Q8 | Autophagy-related protein 18b OS=Arabidopsis thaliana OX=3702 GN=ATG18B PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MFH2 | Autophagy-related protein 18b OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg31504, jg31508, jg31715, jg39224 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9206 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014891 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g191900 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg24799, Sbi_jg8667, Sbi_jg8668 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19941 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022255 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42544, Sgl47298 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010057, gene:ENSEOMG00000032734 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0017410, CQ.Regalona.r1.8BG0018450 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30264620, pistato.v30265120 |
| Apiaceae | Apium graveolens | 1 | Ag5G01535 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G012380 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710459 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2582.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G27477 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G30510.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025790m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g28400.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g084790.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2651 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2793 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g07520 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0460s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g29810 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.368 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000707 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G26608 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3751, BH07.3577, CH07.3643 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0148630, gene-QOZ80_2BG0204010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0623190.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_026060 |
| Poaceae | Oryza coarctata | 2 | Oco03G023990, Oco04G024520 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g54910.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G303200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202914 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr06G000590, Chr09G017910, Chr11G014680, Chr13G002100 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G628100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG053180, gene_TRIDC6BG061740 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G353600.1, TraesCS6B02G386200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb257610_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-8453 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14604 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g19270 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.197 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13387 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4239 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.129 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014569 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16638 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14583 |
| Salicaceae | Populus euphratica | 1 | populus_peu05536 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602898 |
| Solanaceae | Solanum chilense | 1 | SOLCI007331500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024325 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.12580_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0939 |
| Zosteraceae | Zostera marina | 1 | Zosma03g12480.v3.1 |