Basic Information
Locus ID:
GOSA_00022232
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig45 | 51639 | 58450 | + | GOSA_00022232 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 55,158.86 Da | 43.23 | 89.57 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 209 | 5.7E-16 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 223 | 277 | 1.1E-8 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 52 | 81 | 7.8E-5 | IPR002110 |
| SUPERFAMILY | SSF57850 | RING/U-box | 318 | 377 | 6.71E-6 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 276 | 6.22E-49 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 13 | 146 | 5.9E-30 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 147 | 284 | 2.7E-25 | IPR036770 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 0.0047 | IPR002110 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 3.3E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 4.1E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.0053 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 0.95 | IPR002110 |
| SMART | SM00184 | ring_2 | 321 | 370 | 0.0086 | IPR001841 |
| SMART | SM00248 | ANK_2a | 256 | 284 | 3000.0 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 208 | 11.82427 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 9.118069 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 371 | 9.169853 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 9.80474 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 10.95327 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 12.66271 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 12.42232 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 8.720098 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 9.13699 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 11.558956 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 250 | 9.940542 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_010687705.2 | probable E3 ubiquitin-protein ligase XBOS32 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QNZ5 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_158010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology