Basic Information
Locus ID:
GOSA_00022145
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Short Name:
TATC
Description:
Sec-independent protein translocase protein TATC
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig623 | 820162 | 826513 | + | GOSA_00022145 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 38,491.65 Da | 35.21 | 110.77 | 0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00902 | Sec-independent protein translocase protein (TatC) | 126 | 334 | 7.8E-62 | IPR002033 |
| TIGRFAM | TIGR00945 | tatC: twin arginine-targeting protein translocase TatC | 124 | 339 | 7.8E-81 | IPR002033 |
| ProSitePatterns | PS01218 | TatC family signature. | 266 | 285 | - | IPR019820 |
| PRINTS | PR01840 | Bacterial Sec-independent translocation TatC protein family signature | 215 | 241 | 3.5E-43 | IPR002033 |
| PRINTS | PR01840 | Bacterial Sec-independent translocation TatC protein family signature | 266 | 294 | 3.5E-43 | IPR002033 |
| PRINTS | PR01840 | Bacterial Sec-independent translocation TatC protein family signature | 197 | 215 | 3.5E-43 | IPR002033 |
| PRINTS | PR01840 | Bacterial Sec-independent translocation TatC protein family signature | 123 | 150 | 3.5E-43 | IPR002033 |
| Hamap | MF_00902 | Sec-independent protein translocase protein TatC [tatC]. | 119 | 351 | 16.174473 | IPR002033 |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01110.1 | Sec-independent periplasmic protein translocase. mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein. | 0 |
| RefSeq | XP_010694391.1 | sec-independent protein translocase protein TATC, chloroplastic [Beta vulgaris subsp. vulgaris] | 0 |
| Q9AVE6 | Sec-independent protein translocase protein TATC, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TATC PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9D4Y6 | Sec-independent protein translocase protein TATC, chloroplastic OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg5212, jg7294, jg9115 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4090 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025502 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g143080 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg12881, Sbi_jg36217, Sbi_jg52990 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg4311, Seu_jg8868 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00021462, GOSA_00022145, GOSA_00024757 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl25377, Sgl30556, Sgl33047, Sgl38283 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000512, gene:ENSEOMG00000002990 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0013460, CQ.Regalona.r1.6BG0014020 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30215990 |
| Apiaceae | Apium graveolens | 2 | Ag1G01604, Ag6G00536 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G005480 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705632, gene-LOC103715160 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3194.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G08938, Ftri13G24304, Ftri18G24265 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G01110.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000946m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g12580.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g064510.2N, BniB04g009920.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G2068 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2268 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g14340, gene.Cymno11g02270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0450s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00150 |
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.Contig10.11, evm.TU.Contig10.5, evm.TU.LG03.1469 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019106 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13258, Lb2G13263 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.4263, BH02.4295, BH04.1859, CH02.4335 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0018590, gene-QOZ80_1BG0068580 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0261530.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046000 |
| Poaceae | Oryza coarctata | 2 | Oco01G010820, Oco02G011740 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g31680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G226500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301535, Pt_Chr0301555 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G012930, Chr14G009100, Chr21G009270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G332600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG027340, gene_TRIDC3BG032550 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G193600.1, TraesCS3B02G224200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb009240_P002, Zm00001eb399680_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21630 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG04.2746, evm.TU.LG08.404, evm.TU.LG08.405 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g04140, gene.Posoc04g21740 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.141 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9195 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17475 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.87 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004794 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11637 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2793 |
| Salicaceae | Populus euphratica | 1 | populus_peu21099 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641665 |
| Solanaceae | Solanum chilense | 1 | SOLCI005484900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020382 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1584 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1351 |
| Zosteraceae | Zostera marina | 2 | Zosma03g01760.v3.1, Zosma04g19260.v3.1 |