Basic Information
Locus ID:
GOSA_00021088
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig236 | 741517 | 742254 | + | GOSA_00021088 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 28,150.79 Da | 43.49 | 77.63 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 178 | 222 | 1.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 158 | 228 | 1.25E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 128 | 229 | 1.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 179 | 221 | 1.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 179 | 222 | 12.474524 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19950.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_048493060.1 | uncharacterized RING finger protein P32A8.03c-like [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LPN7 | E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QU32 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_146530 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00018972, GOSA_00021088 |
| Amaranthaceae | Suaeda glauca | 13 | Sgl10267, Sgl10278, Sgl15511, Sgl34054, Sgl34088, Sgl34258 ... |