Basic Information
Locus ID:
GOSA_00021044
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
RNA-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig236 | 23690 | 33505 | - | GOSA_00021044 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 26,524.44 Da | 51.56 | 70.32 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 151 | 219 | 1.5E-9 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 131 | 244 | 4.84E-15 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 145 | 236 | 5.4E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 150 | 231 | 1.8E-4 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 149 | 235 | 11.844008 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 0 |
| RefSeq | XP_021760995.1 | RNA-binding protein 2-like [Chenopodium quinoa] | 0 |
| G7ID19 | RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QXE2 | RRM domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_130520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology