Basic Information
Locus ID:
GOSA_00020673
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig509 | 237455 | 241025 | - | GOSA_00020673 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 50,505.21 Da | 54.37 | 65.83 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 245 | 309 | 8.84944E-22 | - |
| CDD | cd16872 | ARID_HMGB9-like | 23 | 108 | 2.40141E-48 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 245 | 312 | 1.2E-16 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 24 | 108 | 3.6E-19 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 19 | 115 | 1.19E-28 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 238 | 317 | 1.57E-21 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 226 | 324 | 9.4E-22 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 13 | 121 | 1.5E-27 | IPR036431 |
| SMART | SM00398 | hmgende2 | 244 | 313 | 1.1E-21 | IPR009071 |
| SMART | SM00501 | bright_3 | 22 | 113 | 2.1E-25 | IPR001606 |
| SMART | SM01014 | ARID_2 | 18 | 108 | 3.8E-29 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 21 | 112 | 26.345009 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 245 | 312 | 15.695063 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 447 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 458 | - | - |
| Coils | Coil | Coil | 348 | 372 | - | - |
| Coils | Coil | Coil | 294 | 314 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021745861.1 | high mobility group B protein 15-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LZC3 | High mobility group B protein 15-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology