Basic Information
Locus ID:
GOSA_00020443
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig147 | 1065962 | 1068688 | - | GOSA_00020443 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.58 | 40,292.59 Da | 49.32 | 76.85 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 240 | 284 | 8.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 199 | 235 | 0.032 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 305 | 340 | 1.8E-4 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 17 | 88 | 6.2E-24 | IPR022052 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 99 | 345 | 1.67E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 253 | 4.3E-70 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 254 | 355 | 2.1E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 195 | 235 | 3.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 238 | 284 | 3.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 146 | 186 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 301 | 341 | 7.4E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 153 | 188 | 8.781968 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 308 | 342 | 9.40565 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 202 | 244 | 11.310488 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 202 | 238 | 8.702878 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 251 | 286 | 9.873505 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 153 | 188 | 10.441614 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 271 | 285 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 173 | 187 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 271 | 285 | 1.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 328 | 342 | 1.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 173 | 187 | 1.5E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_021753061.1 | WD-40 repeat-containing protein MSI2-like [Chenopodium quinoa] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LGD6 | CAF1C_H4-bd domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology