Basic Information
Locus ID:
GOSA_00020435
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig147 | 971583 | 982701 | + | GOSA_00020435 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 201,670.02 Da | 47.70 | 82.19 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1452 | 1873 | 8.23237E-122 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1499 | 1878 | 9.5E-81 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 174 | 637 | 2.96E-36 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1445 | 1871 | 3.27E-94 | IPR035983 |
| Gene3D | G3DSA:1.25.10.10 | - | 163 | 477 | 3.5E-45 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1751 | 1876 | 2.1E-32 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1394 | 1641 | 1.2E-45 | - |
| SMART | SM00185 | arm_5 | 325 | 363 | 8.3 | IPR000225 |
| SMART | SM00185 | arm_5 | 206 | 247 | 94.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 282 | 322 | 73.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1463 | 1878 | 1.5E-80 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1476 | 1878 | 55.126293 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1059 | 1093 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 693 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 948 | 1157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1526 | 1541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 637 | 693 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 637 | 658 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1261 | 1295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 948 | 1001 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1261 | 1293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1177 | 1196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1033 | 1047 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1119 | 1157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1524 | 1546 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1094 | 1115 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_021860892.1 | E3 ubiquitin-protein ligase UPL3 [Spinacia oleracea] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R9A0 | HECT-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_097120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology