Basic Information
Locus ID:
GOSA_00020321
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig18 | 1169090 | 1178376 | + | GOSA_00020321 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 44,286.84 Da | 58.22 | 55.29 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 337 | 377 | 2.14398E-26 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 336 | 382 | 1.9E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 331 | 383 | 1.15E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 322 | 387 | 1.7E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 338 | 376 | 0.0018 | IPR001841 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 314 | 389 | 1.0E-8 | IPR017066 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 46 | 112 | 1800.0 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 338 | 377 | 11.250026 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 25 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021851630.1 | probable E3 ubiquitin-protein ligase LUL3 [Spinacia oleracea] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A1VUB6 | RING-type E3 ubiquitin transferase OS=Morella rubra OX=262757 GN=CJ030_MR5G023163 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology