Basic Information
Locus ID:
GOSA_00020055
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
F-box kelch-repeat protein At3g23880-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig487 | 987468 | 988736 | + | GOSA_00020055 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 47,984.56 Da | 55.90 | 89.29 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 68 | 107 | 1.3E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 64 | 141 | 4.58E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 57 | 264 | 6.0E-6 | - |
| SMART | SM00256 | fbox_2 | 71 | 112 | 0.0015 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 172 | 360 | 3.7E-19 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G33530.1 | F-box family protein. | 0 |
| RefSeq | XP_021729162.1 | F-box/kelch-repeat protein At3g23880-like [Chenopodium quinoa] | 0 |
| Q9C800 | Putative F-box protein At1g33530 OS=Arabidopsis thaliana OX=3702 GN=At1g33530 PE=4 SV=1 | 0 | |
| TrEMBL | A0A0K9QQ31 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_154110 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_16224, gene_16225, gene_3309 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah018628, Ah018636, Ah026408, Ah034286 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_2g035230, BVRB_2g035240, BVRB_3g052040, BVRB_7g158190 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg13919, Sbi_jg15090, Sbi_jg15094, Sbi_jg52019 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg26400, Seu_jg26406, Seu_jg9833 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00020055, GOSA_00020064, GOSA_00022519 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl01329, Sgl01345, Sgl01359, Sgl06422, Sgl06435, Sgl06515 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015046, gene:ENSEOMG00000031880 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0004970, CQ.Regalona.r1.3BG0005000 ... |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.1531, evm.TU.LG01.1541, evm.TU.LG14.787 ... |