Basic Information
Locus ID:
GOSA_00020040
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig487 | 845642 | 847433 | - | GOSA_00020040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.85 | 38,882.30 Da | 49.45 | 81.81 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 297 | 339 | 3.0852E-17 | - |
| Pfam | PF13639 | Ring finger domain | 295 | 339 | 3.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 291 | 342 | 1.38E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 257 | 343 | 2.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 297 | 338 | 9.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 297 | 339 | 11.95817 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 205 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17730.1 | NEP-interacting protein 2. Intrinsic thylakoid membrane protein that fixes RPOTmp on the stromal side of the thylakoid membrane. | 0 |
| RefSeq | XP_048496830.1 | putative RING-H2 finger protein ATL21A isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8GT74 | NEP1-interacting protein 2 OS=Arabidopsis thaliana OX=3702 GN=NIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L2M9 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology