Basic Information
Locus ID:
GOSA_00020036
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig487 | 835141 | 836549 | - | GOSA_00020036 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.87 | 39,241.01 Da | 52.30 | 74.46 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 301 | 343 | 2.03739E-15 | - |
| Pfam | PF13639 | Ring finger domain | 299 | 343 | 1.2E-12 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 25 | 82 | 8.4E-11 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 296 | 346 | 5.59E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 259 | 347 | 1.5E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 301 | 342 | 3.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 301 | 343 | 12.725326 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07040.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021761648.1 | RING-H2 finger protein ATL22-like [Chenopodium quinoa] | 0 |
| Q9FL42 | Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1 | 0 | |
| TrEMBL | A0A7C9CJG6 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology