Basic Information
Locus ID:
GOSA_00020030
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig487 | 809525 | 811054 | - | GOSA_00020030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 43,591.02 Da | 44.00 | 76.64 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 328 | 371 | 2.09039E-14 | - |
| Pfam | PF13639 | Ring finger domain | 328 | 371 | 9.3E-13 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 48 | 105 | 1.8E-11 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 321 | 377 | 1.67E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 289 | 375 | 7.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 329 | 370 | 3.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 329 | 371 | 12.784338 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010671483.2 | putative RING-H2 finger protein ATL21B [Beta vulgaris subsp. vulgaris] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A803L2N9 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology