Basic Information
Locus ID:
GOSA_00019458
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig857 | 1401739 | 1409386 | + | GOSA_00019458 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.02 | 34,747.44 Da | 33.86 | 101.53 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 24 | 65 | 2.7E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 24 | 70 | 6.02E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 79 | 172 | 8.37E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 15 | 63 | 3.8E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 64 | 177 | 1.1E-10 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 17 | 64 | 11.19311 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01620.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_021727260.1 | F-box protein SKIP28-like [Chenopodium quinoa] | 0 |
| Q9ZU90 | F-box protein SKIP28 OS=Arabidopsis thaliana OX=3702 GN=SKIP28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LJL7 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology