Basic Information
Locus ID:
GOSA_00019259
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig57 | 735253 | 748268 | - | GOSA_00019259 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 42,779.70 Da | 55.38 | 76.67 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 270 | 293 | 0.0017 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 345 | 370 | 4.1E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 310 | 338 | 1.5E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 266 | 298 | 6.02E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 340 | 371 | 5.34E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 303 | 339 | 4.39E-8 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 262 | 299 | 1.3E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 303 | 340 | 3.7E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 341 | 372 | 3.4E-9 | - |
| SMART | SM00547 | zf_4 | 272 | 296 | 2.2E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 312 | 336 | 8.1E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 345 | 369 | 2.5E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 343 | 372 | 9.80014 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 310 | 339 | 10.048569 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 270 | 299 | 9.190362 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 274 | 293 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 347 | 366 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 314 | 333 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_021759303.1 | zinc finger protein VAR3, chloroplastic-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9QPR9 | Zinc finger protein VAR3, chloroplastic OS=Spinacia oleracea OX=3562 GN=SOVF_155050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology