halophFGD

Basic Information

Locus ID: GOSA_00019151

Species & Taxonomic ID: Suaeda aralocaspica & 224144

Genome Assembly: GCA_016808085.1

Description: CCR4-NOT transcription complex subunit

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Contig0	188480	193795	+	GOSA_00019151

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.77	25,502.33 Da	48.60	61.83	-0.71

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	1	26	-	-
Coils	Coil	Coil	80	100	-	-

KEGG Pathway

KO Term:

K12607 (CCR4-NOT transcription complex subunit 10)

Pathway:

ko03018 (RNA degradation) map03018 (RNA degradation)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G52840.2	-
RefSeq	XP_019102886.2	uncharacterized protein LOC109133694 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q9FLX7	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g52840 PE=1 SV=1
TrEMBL	A0A803LH60	CCR4-NOT transcription complex subunit 10 OS=Chenopodium quinoa OX=63459 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Beta vulgaris	1	BVRB_1g013080
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg32175, Sbi_jg35571, Sbi_jg44497, Sbi_jg57117 ... Sbi_jg59104, Sbi_jg6932, Sbi_jg781
Amaranthaceae	Salicornia europaea	4	Seu_jg21848, Seu_jg22608, Seu_jg24262, Seu_jg8005
Amaranthaceae	Suaeda aralocaspica	116	GOSA_00008971, GOSA_00009964, GOSA_00010539, GOSA_00010541 ... GOSA_00010576, GOSA_00012006, GOSA_00012317, GOSA_00012331, GOSA_00012426, GOSA_00013646, GOSA_00013671, GOSA_00013677, GOSA_00013678, GOSA_00013877, GOSA_00013965, GOSA_00014533, GOSA_00014561, GOSA_00014620, GOSA_00014814, GOSA_00015304, GOSA_00015583, GOSA_00015613, GOSA_00015991, GOSA_00016046, GOSA_00016207, GOSA_00016233, GOSA_00016601, GOSA_00016609, GOSA_00016715, GOSA_00016845, GOSA_00016846, GOSA_00017226, GOSA_00017230, GOSA_00018607, GOSA_00018641, GOSA_00019087, GOSA_00019151, GOSA_00019190, GOSA_00019374, GOSA_00019379, GOSA_00019393, GOSA_00019606, GOSA_00019612, GOSA_00019613, GOSA_00019789, GOSA_00019792, GOSA_00019804, GOSA_00020807, GOSA_00021454, GOSA_00021612, GOSA_00021640, GOSA_00021656, GOSA_00021840, GOSA_00021867, GOSA_00021927, GOSA_00021935, GOSA_00022345, GOSA_00022364, GOSA_00022607, GOSA_00022769, GOSA_00022791, GOSA_00022798, GOSA_00022800, GOSA_00022802, GOSA_00023024, GOSA_00023472, GOSA_00024288, GOSA_00024390, GOSA_00024509, GOSA_00024515, GOSA_00024549, GOSA_00024588, GOSA_00024616, GOSA_00024667, GOSA_00024714, GOSA_00024750, GOSA_00025306, GOSA_00025425, GOSA_00025426, GOSA_00025467, GOSA_00025910, GOSA_00025911, GOSA_00025916, GOSA_00026156, GOSA_00026427, GOSA_00026448, GOSA_00026573, GOSA_00026602, GOSA_00027022, GOSA_00027060, GOSA_00027075, GOSA_00027085, GOSA_00027122, GOSA_00027153, GOSA_00027319, GOSA_00027544, GOSA_00027816, GOSA_00028030, GOSA_00028197, GOSA_00028219, GOSA_00028220, GOSA_00028258, GOSA_00028339, GOSA_00028497, GOSA_00028563, GOSA_00028596, GOSA_00028611, GOSA_00028654, GOSA_00028674, GOSA_00028710, GOSA_00028917, GOSA_00028996, GOSA_00029041, GOSA_00029101, GOSA_00029209, GOSA_00029374
Amaranthaceae	Suaeda glauca	7	Sgl04881, Sgl09926, Sgl22097, Sgl27371, Sgl75750, Sgl78946 ... Sgl81404
Portulacaceae	Portulaca oleracea	1	evm.TU.LG15.1418
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g12240