Basic Information
Locus ID:
GOSA_00018972
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig576 | 1682690 | 1683412 | + | GOSA_00018972 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 27,777.20 Da | 45.30 | 76.71 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 171 | 216 | 2.6E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 171 | 222 | 2.87E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 132 | 222 | 8.5E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 172 | 215 | 2.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 172 | 216 | 12.681067 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G64920.1 | COP1-interacting protein 8. Encodes a RING-H2 protein that interacts with the RING finger domain of COP1. CIP8 exhibits a strong interaction with the E2 ubiquitin conjugating enzyme AtUBC8 through its N-terminal domain and promotes ubiquitination in an E2-dependent fashion in vitro. It is possible that the AtUBC8-CIP8 module might interact with COP1 in vivo, thereby participating in proteasome-mediated degradation of HY5. | 0 |
| RefSeq | XP_021754447.1 | RING-H2 finger protein ATL22-like [Chenopodium quinoa] | 0 |
| Q9VE61 | E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster OX=7227 GN=CG7694 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QU32 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_146530 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00018972, GOSA_00021088 |
| Amaranthaceae | Suaeda glauca | 13 | Sgl10267, Sgl10278, Sgl15511, Sgl34054, Sgl34088, Sgl34258 ... |