Basic Information
Locus ID:
GOSA_00018864
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig576 | 50933 | 62973 | + | GOSA_00018864 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 47,974.59 Da | 51.63 | 74.70 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 4.53479E-28 | - |
| Pfam | PF00627 | UBA/TS-N domain | 407 | 440 | 3.8E-11 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 234 | 269 | 7.0E-12 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 74 | 1.9E-17 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 325 | 380 | 1.6E-21 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 229 | 282 | 9.4E-11 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 81 | 9.26E-21 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 384 | 446 | 1.63E-14 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 321 | 386 | 4.19E-20 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 225 | 274 | 1.1E-17 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 397 | 444 | 2.1E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 6.4E-26 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 316 | 381 | 1.3E-25 | IPR036353 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 2.2E-20 | IPR000626 |
| SMART | SM00727 | CBM | 323 | 366 | 1.0E-6 | IPR006636 |
| SMART | SM00165 | uba_6 | 231 | 271 | 6.2E-5 | IPR015940 |
| SMART | SM00165 | uba_6 | 405 | 442 | 4.6E-7 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 446 | 5.9E-92 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 74 | 18.976469 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 229 | 272 | 12.450505 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 402 | 443 | 13.920428 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 351 | 373 | 4.3E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 431 | 446 | 4.3E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 399 | 415 | 4.3E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 416 | 430 | 4.3E-30 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 169 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021754095.1 | ubiquitin receptor RAD23c-like isoform X3 [Chenopodium quinoa] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T1QZT9 | DNA repair protein RAD23 OS=Carya illinoinensis OX=32201 GN=CIPAW_03G060800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology