Basic Information
Locus ID:
GOSA_00018332
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig99 | 1824847 | 1831350 | + | GOSA_00018332 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 111,991.00 Da | 39.43 | 88.54 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 817 | 850 | 8.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 398 | 432 | 0.0018 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 308 | 875 | 3.61E-42 | IPR011047 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 594 | 994 | 7.46E-26 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 737 | 995 | 3.9E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 240 | 456 | 2.6E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 479 | 717 | 1.0E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 285 | 324 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 435 | 476 | 0.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 523 | 563 | 0.82 | IPR001680 |
| SMART | SM00320 | WD40_4 | 811 | 850 | 1.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 432 | 2.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 896 | 935 | 0.068 | IPR001680 |
| SMART | SM00320 | WD40_4 | 768 | 808 | 9.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 385 | 210.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 818 | 850 | 10.653776 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 7 | 39 | 7.889756 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 818 | 859 | 13.081652 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 541 | 572 | 8.904377 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 398 | 436 | 9.335602 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 398 | 441 | 11.510997 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 419 | 433 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_048495165.1 | topless-related protein 1 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5B7C2M3 | Topless-related protein 1-like OS=Davidia involucrata OX=16924 GN=Din_043937 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25213 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g030840 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018332 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62347, Sgl66884 |