Basic Information
Locus ID:
GOSA_00018282
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
CCR4-associated factor 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig99 | 1389619 | 1390449 | + | GOSA_00018282 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.56 | 31,361.38 Da | 33.80 | 90.36 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 167 | 249 | 1.2E-5 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 21 | 142 | 1.8E-11 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 18 | 271 | 6.36E-90 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 6 | 274 | 5.3E-101 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80780.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_021857067.1 | probable CCR4-associated factor 1 homolog 7 [Spinacia oleracea] | 0 |
| Q9SAI2 | Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RG22 | poly(A)-specific ribonuclease OS=Spinacia oleracea OX=3562 GN=SOVF_075480 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology