Basic Information
Locus ID:
GOSA_00018248
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Ubiquitin-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig99 | 1145239 | 1146033 | + | GOSA_00018248 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 30,292.67 Da | 58.88 | 102.92 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 3 | 71 | 2.34444E-8 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 197 | 255 | 0.00164162 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 98 | 166 | 9.72048E-8 | - |
| Pfam | PF00240 | Ubiquitin family | 193 | 254 | 1.2E-5 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 98 | 168 | 1.2E-7 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 7 | 73 | 5.5E-7 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 193 | 260 | 1.38E-9 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 76 | 3.68E-11 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 92 | 169 | 3.22E-11 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 70 | 2.5E-8 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 95 | 168 | 2.8E-14 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 170 | 260 | 2.6E-7 | - |
| SMART | SM00213 | ubq_7 | 96 | 168 | 0.35 | IPR000626 |
| SMART | SM00213 | ubq_7 | 1 | 73 | 2.5E-8 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 66 | 10.897798 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 182 | 254 | 10.854246 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 96 | 172 | 10.963123 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32350.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_021719193.1 | uncharacterized protein LOC110686894 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A2N9EGT7 | Polyubiquitin-like OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1763 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37493 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24898 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah007967, Ah022537 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21026, Sbi_jg22763 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16636 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018248 |
| Amaranthaceae | Suaeda glauca | 9 | Sgl01855, Sgl01858, Sgl01860, Sgl07007, Sgl07012, Sgl07014 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011855, gene:ENSEOMG00000030547 ... |
| Apiaceae | Apium graveolens | 1 | Ag11G03314 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G16423 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G32350.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002923m.g.v1.0, Thhalv10017634m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g14720.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g021550.2N |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11138 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.361 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004435 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG18.55 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1354 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-20439, nbisL1-mrna-20461 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8799 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21331 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000003l.320 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17199 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4734 |
| Salicaceae | Populus euphratica | 1 | populus_peu24077 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132619510 |
| Solanaceae | Solanum chilense | 1 | SOLCI002204000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024252 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13809 |