Basic Information
Locus ID:
GOSA_00017978
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
nucleic acid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig56 | 1566389 | 1570162 | - | GOSA_00017978 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 28,205.20 Da | 41.42 | 67.27 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12269 | RRM_Vip1_like | 6 | 74 | 1.68587E-32 | IPR034360 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 66 | 2.8E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 4 | 88 | 2.58E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 3 | 108 | 1.3E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 74 | 1.9E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 78 | 11.195903 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 264 | - | - |
| Coils | Coil | Coil | 222 | 242 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_021725827.1 | binding partner of ACD11 1-like [Chenopodium quinoa] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RNP8 | RRM domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_052070 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology