Basic Information
Locus ID:
GOSA_00017974
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig56 | 1549592 | 1550086 | - | GOSA_00017974 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.33 | 18,094.07 Da | 35.48 | 86.40 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 93 | 155 | 3.30943E-17 | IPR002048 |
| CDD | cd00051 | EFh | 17 | 79 | 2.76109E-13 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 17 | 78 | 8.1E-16 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 92 | 154 | 4.9E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 9 | 155 | 8.55E-44 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 82 | 8.2E-23 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 86 | 162 | 4.3E-22 | - |
| SMART | SM00054 | efh_1 | 53 | 81 | 0.041 | IPR002048 |
| SMART | SM00054 | efh_1 | 129 | 157 | 5.4E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 17 | 45 | 8.6E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 93 | 121 | 2.0E-4 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 13 | 48 | 15.043417 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 125 | 160 | 13.230217 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 49 | 84 | 11.807551 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 89 | 124 | 14.736568 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 62 | 74 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 26 | 38 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 138 | 150 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 102 | 114 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03000.1 | EF hand calcium-binding protein family. Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner | 0 |
| RefSeq | XP_010671108.1 | probable calcium-binding protein CML18 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9M8U1 | Probable calcium-binding protein CML18 OS=Arabidopsis thaliana OX=3702 GN=CML18 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KSR4 | Calcium-binding protein CML18 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology