Basic Information
Locus ID:
GOSA_00017942
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig56 | 1282894 | 1291200 | - | GOSA_00017942 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.09 | 91,247.44 Da | 37.35 | 83.30 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 344 | 400 | 6.51623E-28 | - |
| Pfam | PF01426 | BAH domain | 62 | 172 | 3.9E-11 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 411 | 768 | 2.6E-37 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 345 | 400 | 1.3E-9 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 340 | 404 | 4.03E-13 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 234 | 768 | 1.66E-76 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 236 | 785 | 4.8E-229 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 16 | 160 | 1.3E-37 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 563 | 734 | 4.8E-229 | - |
| SMART | SM00439 | BAH_4 | 58 | 175 | 5.7E-16 | IPR001025 |
| SMART | SM00298 | chromo_7 | 344 | 403 | 2.4E-9 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 412 | 765 | 6.3E-30 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 326 | 401 | 11.634401 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 58 | 175 | 17.398392 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 234 | 775 | 47.680141 | IPR001525 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 368 | 388 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 415 | 427 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 235 | 251 | 4.3E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 458 | 472 | 4.3E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 504 | 517 | 4.3E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 336 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_048496750.1 | DNA (cytosine-5)-methyltransferase CMT2 isoform X3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0K9S2Y1 | Cytosine-specific methyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_005540 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology