Basic Information
Locus ID:
GOSA_00017939
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig56 | 1265956 | 1269206 | - | GOSA_00017939 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.41 | 55,111.77 Da | 41.59 | 76.44 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 167 | 468 | 6.87892E-50 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 297 | 332 | 3.8E-7 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 217 | 273 | 2.4E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 345 | 383 | 0.021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 433 | 468 | 9.2E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 136 | 469 | 5.22E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 213 | 471 | 1.3E-93 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 73 | 212 | 5.7E-37 | IPR015943 |
| SMART | SM00320 | WD40_4 | 429 | 468 | 6.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 156 | 195 | 0.0015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 383 | 0.0019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 386 | 426 | 300.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 293 | 332 | 3.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 251 | 289 | 5.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 209 | 248 | 0.0057 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 300 | 341 | 13.917108 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 436 | 469 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 436 | 469 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 216 | 248 | 8.966513 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 163 | 204 | 10.70896 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 300 | 332 | 11.471045 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 216 | 257 | 10.70896 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 163 | 195 | 8.966513 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 455 | 469 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_010671158.1 | cell division cycle 20.2, cofactor of APC complex [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L226 | ANAPC4_WD40 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology