Basic Information
Locus ID:
GOSA_00017803
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig56 | 180131 | 186099 | + | GOSA_00017803 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 31,865.10 Da | 43.13 | 55.02 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 192 | 274 | 2.33466E-37 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 194 | 263 | 1.2E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 175 | 286 | 1.09E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 188 | 278 | 1.0E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 193 | 271 | 3.9E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 192 | 278 | 11.844008 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76940.2 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_021763634.1 | nuclear speckle RNA-binding protein A-like [Chenopodium quinoa] | 0 |
| G7ID19 | RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RJL1 | RRM domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_058860 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology