Basic Information
Locus ID:
GOSA_00017535
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig361 | 516900 | 531087 | - | GOSA_00017535 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 143,118.63 Da | 39.46 | 78.77 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 11 | 473 | 2.75125E-134 | - |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 907 | 1049 | 1.6E-37 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 227 | 509 | 9.3E-78 | IPR000602 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 12 | 221 | 1.3E-68 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 760 | 904 | 2.5E-20 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 514 | 606 | 1.6E-18 | IPR015341 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 1132 | 1255 | 1.8E-6 | IPR041147 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 906 | 1258 | 1.3E-87 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 226 | 511 | 6.67E-89 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 619 | 904 | 6.75E-67 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 7 | 221 | 2.61E-72 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 513 | 607 | 4.25E-26 | IPR028995 |
| Gene3D | G3DSA:2.60.40.1360 | - | 1119 | 1258 | 1.2E-30 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 11 | 223 | 3.7E-90 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 556 | 612 | 3.9E-20 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 624 | 735 | 2.6E-23 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 905 | 1098 | 1.4E-72 | - |
| Gene3D | G3DSA:2.70.98.30 | - | 757 | 904 | 5.1E-42 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 478 | 555 | 6.9E-29 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 224 | 477 | 3.5E-98 | IPR027291 |
| SMART | SM00872 | Alpha_mann_mid_2 | 514 | 588 | 4.3E-19 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_021862222.1 | alpha-mannosidase isoform X1 [Spinacia oleracea] | 0 |
| Q9FKW9 | Probable alpha-mannosidase At5g66150 OS=Arabidopsis thaliana OX=3702 GN=At5g66150 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9QHW5 | Alpha-mannosidase OS=Spinacia oleracea OX=3562 GN=SOVF_177470 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology