Basic Information
Locus ID:
GOSA_00017393
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig223 | 1315286 | 1322006 | - | GOSA_00017393 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 81,899.55 Da | 39.02 | 85.42 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 36 | 335 | 3.22979E-161 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 352 | 651 | 4.24743E-145 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 357 | 647 | 2.7E-28 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 71 | 330 | 3.2E-7 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 351 | 651 | 2.88E-44 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 35 | 334 | 3.4E-41 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 350 | 652 | 2.3E-50 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 35 | 334 | 6.1E-37 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 352 | 652 | 31.860901 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 36 | 336 | 34.946541 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 706 | 726 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 705 | 726 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_021759066.1 | glycerophosphodiester phosphodiesterase GDPDL3-like [Chenopodium quinoa] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0K9RMD6 | glycerophosphodiester phosphodiesterase OS=Spinacia oleracea OX=3562 GN=SOVF_050330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology