Basic Information
Locus ID:
GOSA_00017391
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig223 | 1302587 | 1306965 | - | GOSA_00017391 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.62 | 104,426.96 Da | 34.25 | 88.34 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 1 | 298 | 3.07193E-164 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 707 | 855 | 7.4E-7 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 320 | 630 | 2.8E-25 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 707 | 860 | 3.14E-15 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 314 | 635 | 2.88E-43 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 1 | 298 | 1.39E-38 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 689 | 859 | 2.4E-18 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 1 | 297 | 9.4E-37 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 313 | 634 | 7.4E-46 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 1 | 299 | 35.80727 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 315 | 635 | 33.801605 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66970.1 | SHV3-like 2. | 0 |
| RefSeq | XP_010675854.2 | glycerophosphodiester phosphodiesterase GDPDL3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q7Y208 | Glycerophosphodiester phosphodiesterase GDPDL1 OS=Arabidopsis thaliana OX=3702 GN=GDPDL1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RMD9 | glycerophosphodiester phosphodiesterase OS=Spinacia oleracea OX=3562 GN=SOVF_050320 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology