Basic Information
Locus ID:
GOSA_00017054
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig110 | 465910 | 475482 | + | GOSA_00017054 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 68,323.01 Da | 46.76 | 72.49 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 340 | 619 | 1.20641E-57 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 416 | 445 | 0.14 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 583 | 618 | 0.0064 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 337 | 368 | 6.3E-5 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 29 | 3.2E-5 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 503 | 534 | 0.0049 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 375 | 410 | 1.5E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 330 | 618 | 6.18E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 461 | 619 | 3.9E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 217 | 460 | 3.2E-34 | IPR015943 |
| SMART | SM00320 | WD40_4 | 329 | 368 | 4.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 371 | 410 | 5.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 457 | 493 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 414 | 454 | 7.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 538 | 577 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 580 | 619 | 4.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 496 | 534 | 2.6E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 587 | 619 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 421 | 463 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 587 | 619 | 12.156496 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 336 | 377 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 6 | 33 | 9.124043 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 336 | 371 | 9.493783 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 378 | 410 | 12.077406 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 378 | 419 | 14.652308 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 421 | 456 | 8.57106 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 606 | 619 | 5.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 355 | 369 | 5.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 397 | 411 | 5.3E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 181 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 0 |
| RefSeq | XP_019106660.1 | transcriptional corepressor LEUNIG isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RWK8 | LisH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_026770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology