Basic Information
Locus ID:
GOSA_00017032
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig110 | 242840 | 243556 | - | GOSA_00017032 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 19,771.91 Da | 54.35 | 72.76 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 15 | 65 | 1.26806E-23 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 17 | 63 | 1.1E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 10 | 76 | 3.95E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 77 | 5.9E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 17 | 63 | 4.8E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 17 | 64 | 12.651561 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 32 | 41 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 103 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_010686502.1 | E3 ubiquitin-protein ligase RMA1H1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LLG8 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology