Basic Information
Locus ID:
GOSA_00016978
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig286 | 677676 | 681481 | - | GOSA_00016978 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 63,470.02 Da | 31.51 | 97.23 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 209 | 251 | 2.8114E-29 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 332 | 371 | 1.9E-10 | IPR000225 |
| Pfam | PF04564 | U-box domain | 205 | 275 | 6.5E-22 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 301 | 581 | 8.28E-45 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 205 | 280 | 9.84E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 286 | 584 | 4.4E-49 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 202 | 278 | 3.6E-31 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 208 | 271 | 2.5E-36 | IPR003613 |
| SMART | SM00185 | arm_5 | 496 | 536 | 410.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 373 | 413 | 7.3 | IPR000225 |
| SMART | SM00185 | arm_5 | 414 | 454 | 80.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 332 | 372 | 3.4E-6 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 204 | 278 | 44.946766 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 343 | 385 | 13.2824 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_010666679.2 | U-box domain-containing protein 14 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8B407 | RING-type E3 ubiquitin transferase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_003780 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology