Basic Information
Locus ID:
GOSA_00016331
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig226 | 663715 | 665073 | - | GOSA_00016331 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.55 | 48,598.00 Da | 81.32 | 59.78 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 223 | 264 | 1.97717E-24 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 320 | 437 | 4.2E-40 | IPR010543 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 222 | 263 | 6.0E-10 | - |
| Pfam | PF14369 | zinc-ribbon | 6 | 39 | 3.4E-15 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 203 | 270 | 5.08E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 189 | 270 | 4.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 223 | 263 | 2.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 223 | 264 | 12.061441 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 442 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 452 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 67 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_021757285.1 | probable E3 ubiquitin-protein ligase RHC2A [Chenopodium quinoa] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QPG2 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_156260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology