Basic Information
Locus ID:
GOSA_00016324
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
FIZZY-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig226 | 529479 | 533285 | - | GOSA_00016324 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.55 | 56,339.53 Da | 45.13 | 71.80 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 457 | 492 | 8.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 367 | 407 | 2.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 327 | 362 | 3.2E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 195 | 492 | 2.69E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 151 | 494 | 1.1E-120 | IPR015943 |
| SMART | SM00320 | WD40_4 | 323 | 362 | 1.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 236 | 279 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 282 | 319 | 0.17 | IPR001680 |
| SMART | SM00320 | WD40_4 | 453 | 492 | 1.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 192 | 233 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 365 | 407 | 8.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 410 | 450 | 260.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 372 | 416 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 330 | 371 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 330 | 362 | 10.864685 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 460 | 493 | 14.184453 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 460 | 493 | 11.73468 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 479 | 493 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 112 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_010690812.2 | protein FIZZY-RELATED 3 [Beta vulgaris subsp. vulgaris] | 0 |
| A0A396ISC0 | B-type cell cycle switch protein ccs52B OS=Medicago truncatula OX=3880 GN=CCS52B PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9S028 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_009880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology