Basic Information
Locus ID:
GOSA_00016254
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig226 | 9996 | 16720 | - | GOSA_00016254 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 66,524.43 Da | 34.60 | 103.70 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 461 | 558 | 1.74932E-27 | - |
| CDD | cd00030 | C2 | 283 | 385 | 1.25977E-23 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 69 | 248 | 2.8E-15 | IPR039010 |
| Pfam | PF00168 | C2 domain | 281 | 385 | 8.6E-22 | IPR000008 |
| Pfam | PF00168 | C2 domain | 459 | 551 | 3.8E-25 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 457 | 578 | 3.13E-32 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 279 | 410 | 6.83E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 278 | 421 | 6.6E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 440 | 577 | 3.5E-34 | IPR035892 |
| SMART | SM00239 | C2_3c | 282 | 382 | 6.8E-21 | IPR000008 |
| SMART | SM00239 | C2_3c | 460 | 558 | 2.2E-22 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 263 | 383 | 19.604191 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 440 | 559 | 21.39382 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 30.824142 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 524 | 532 | 2.3E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 502 | 515 | 2.3E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 476 | 488 | 2.3E-7 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_021769371.1 | synaptotagmin-5-like isoform X1 [Chenopodium quinoa] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RI35 | Synaptotagmin-5 (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_064340 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology