Basic Information
Locus ID:
GOSA_00015978
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig66 | 212269 | 216555 | + | GOSA_00015978 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.80 | 121,247.43 Da | 35.52 | 57.39 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10910 | PIN_limkain_b1_N_like | 52 | 176 | 5.95063E-60 | - |
| Pfam | PF00098 | Zinc knuckle | 911 | 927 | 1.9E-4 | IPR001878 |
| Pfam | PF00098 | Zinc knuckle | 828 | 844 | 2.5E-4 | IPR001878 |
| Pfam | PF00098 | Zinc knuckle | 485 | 500 | 5.8E-4 | IPR001878 |
| Pfam | PF01936 | NYN domain | 52 | 188 | 2.1E-28 | IPR021139 |
| Pfam | PF00098 | Zinc knuckle | 745 | 759 | 0.0045 | IPR001878 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 902 | 928 | 6.7E-5 | IPR036875 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 815 | 845 | 5.86E-5 | IPR036875 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 271 | 314 | 1.09E-5 | IPR036875 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 343 | 381 | 1.59E-5 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 292 | 376 | 1.3E-6 | - |
| Gene3D | G3DSA:3.40.50.1010 | - | 44 | 195 | 2.5E-7 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 740 | 845 | 3.6E-8 | - |
| SMART | SM00343 | c2hcfinal6 | 597 | 612 | 43.0 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 297 | 313 | 0.034 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 616 | 632 | 0.21 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 277 | 293 | 6.8 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 485 | 501 | 0.019 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 358 | 374 | 0.028 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 1040 | 1056 | 0.11 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 828 | 844 | 0.0048 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 745 | 761 | 0.036 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 911 | 927 | 0.0087 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 746 | 759 | 9.702167 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 829 | 842 | 9.669202 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 617 | 630 | 8.861545 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 1041 | 1054 | 9.257132 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 298 | 311 | 8.861545 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 486 | 499 | 9.636236 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 359 | 372 | 8.581337 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 912 | 925 | 9.850513 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 788 | 809 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1092 | 1115 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62200.1 | Putative endonuclease or glycosyl hydrolase. | 0 |
| RefSeq | XP_021735855.1 | uncharacterized protein LOC110702427 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9RSJ1 | NYN domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_040220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg1360, jg1361, jg28284 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13409 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000019 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g122630 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg31202, Sbi_jg40574, Sbi_jg50602, Sbi_jg58072 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg2161, Seu_jg25694 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004565, GOSA_00015978 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl45144, Sgl49990, Sgl54628, Sgl59964 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000006582, gene:ENSEOMG00000011564 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0028110, CQ.Regalona.r1.5BG0029410 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30007430, pistato.v30095600, pistato.v30096030 |
| Apiaceae | Apium graveolens | 4 | Ag10G00584, Ag11G03948, Ag2G01799, Ag5G00948 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G015580 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707687, gene-LOC120112031 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_02.2256.V1.1, AsparagusV1_04.2023.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G06846 |
| Brassicaceae | Arabidopsis thaliana | 6 | AT3G60940.1, AT3G61028.2, AT3G62200.1, AT3G62210.1 ... |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10003587m.g.v1.0, Thhalv10003670m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp2g24420.v2.2, Sp2g24430.v2.2, Sp5g01180.v2.2 ... |
| Brassicaceae | Brassica nigra | 8 | BniB02g076030.2N, BniB03g020810.2N, BniB03g045060.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0533 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0553 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g18160, gene.Thate02g01740 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6203, nbisL1-mrna-9577 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.530 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007097, Pov_00016530 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00577 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3835, BH03.4118, CH03.4395 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_7AG0578920 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0121010.1, HORVU.MOREX.r3.2HG0121110.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_039355, gene-QYE76_039356, gene-QYE76_039357 |
| Poaceae | Oryza coarctata | 2 | Oco13G013800, Oco14G014630 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g44320.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G365400 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0304813, Pt_Chr0304816, Pt_Chr0304819, Pt_Chr0304821 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G001400, Chr24G014200, Chr27G015920, Chr28G012740 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G302800, Tel4E01G294800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG018900, gene_TRIDC2BG022720 |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G150200.1, TraesCS2A02G150300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb109990_P001, Zm00001eb328720_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-1464, nbis-gene-267, nbis-gene-33090 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g3573, Zma_g5651, Zma_g6935 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.286, evm.TU.LG11.1711 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g12610, gene.Posoc01g12660, gene.Posoc01g12670 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.745 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10594 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13651 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11390 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.598 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013556 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10153 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7379 |
| Salicaceae | Populus euphratica | 3 | populus_peu13168, populus_peu15549, populus_peu15550 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598507, gene-LOC132624935 |
| Solanaceae | Solanum chilense | 4 | SOLCI004444200, SOLCI004444400, SOLCI006622000 ... |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107005422, gene-LOC107010177, gene-LOC107010179 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.17512_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2846 |