Basic Information
Locus ID:
GOSA_00015814
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig200 | 926824 | 930898 | + | GOSA_00015814 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 29,416.59 Da | 56.25 | 55.41 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 145 | 188 | 1.5E-6 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 10 | 91 | 5.2E-19 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 193 | 252 | 1.5E-23 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 145 | 195 | 8.07E-8 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 5 | 80 | 5.36E-18 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 82 | 139 | 3.79E-18 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 139 | 191 | 1.3E-8 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 219 | 255 | 3.7E-18 | - |
| SMART | SM00184 | ring_2 | 146 | 188 | 7.1E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 81 | 145 | 32.922108 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 3 | 79 | 25.143103 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 146 | 188 | 11.146755 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_021724402.1 | E3 ubiquitin-protein ligase RZFP34-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MGQ9 | E3 ubiquitin-protein ligase MIEL1-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology