Basic Information
Locus ID:
GOSA_00015776
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig200 | 364204 | 369627 | + | GOSA_00015776 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 21,810.78 Da | 53.61 | 86.84 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 4 | 39 | 5.2E-11 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 52 | 6.54E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 41 | 1.4E-9 | - |
| SMART | SM00256 | fbox_2 | 5 | 44 | 1.6E-7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 44 | 11.325583 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52320.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021724472.1 | putative F-box protein At1g32420 [Chenopodium quinoa] | 0 |
| Q9FT50 | Putative F-box protein At3g52320 OS=Arabidopsis thaliana OX=3702 GN=At3g52320 PE=4 SV=1 | 0 | |
| TrEMBL | A0A165Z9Y4 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012847 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015776 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl03845, Sgl08938, Sgl80852 |